Hi Mark
really glad to hear you got it to work, you are my first real user outside of kent and ccpn!
some requests if you have time
- please star the project on GitHub (GitHub - varioustoxins/NEF-Pipelines: Nef tools) if you have an account!
- could you share what commands you ran?
- would you able to share directly with me a snippet of the file with the interesting stereo codes (suitably anonymised if needed and just a few relevances residues )
regards
Gary