Analysis V3 installation on AlmaLinux

Hi,

I have tried installing Analysis V3 on a Linux worksation running Alma 9.4, but there is an error at start-up.

I couldn’t find an Analysis install package for Alma, so I took the one for Rocky 9.3, which should be the closest system. It turns out it’s not close enough. Can anyone help me debug the install?

Here is the full error blab:

Program licence (non-profit) valid until Mon Jan 4 15:34:08 2100
Traceback (most recent call last):
File “/opt/ccpnmr3.2/miniconda/lib/python3.10/runpy.py”, line 196, in _run_module_as_main
return _run_code(code, main_globals, None,
File “/opt/ccpnmr3.2/miniconda/lib/python3.10/runpy.py”, line 86, in _run_code
exec(code, run_globals)
File “/opt/ccpnmr3.2/src/python/ccpn/AnalysisAssign/main.py”, line 31, in
from ccpn.framework.Application import defineProgramArguments
File “/opt/ccpnmr3.2/src/python/ccpn/framework/Application.py”, line 29, in
from ccpn.util.decorators import singleton
File “/opt/ccpnmr3.2/src/python/ccpn/util/decorators.py”, line 46, in
import pandas as pd
File “/opt/ccpnmr3.2/miniconda/lib/python3.10/site-packages/pandas/init.py”, line 138, in
from pandas import testing # noqa:PDF015
File “/opt/ccpnmr3.2/miniconda/lib/python3.10/site-packages/pandas/testing.py”, line 6, in
from pandas._testing import (
File “/opt/ccpnmr3.2/miniconda/lib/python3.10/site-packages/pandas/_testing/init.py”, line 52, in
from pandas._testing._io import (
File “/opt/ccpnmr3.2/miniconda/lib/python3.10/site-packages/pandas/_testing/_io.py”, line 7, in
import socket
File “/opt/ccpnmr3.2/miniconda/lib/python3.10/socket.py”, line 51, in
import _socket
ImportError: /opt/ccpnmr3.2/miniconda/lib/python3.10/lib-dynload/_socket.cpython-310-x86_64-linux-gnu.so: failed to map segment from shared object

Seeing that AlmaLinux is now the official Linux flavour favoured by Bruker, I thought it would be important to have it working.

Best wishes,

UPDATE

Hi, just an update to say that I’ve install CCPN V3 on an other workstation and it worked just fine. The broad differences are below:

CCPN DOES NOT WORK:
Alma 9.4
X11

CCPN WORKS:
Alma 9.5
Wayland

Obviously, there could be finer differences, but for now, that’s all I have.

Thanks for the report. I have been using CCPN V3 on Alma since 9.3 with X11 and haven’t been able to reproduce this error. It looks as if there are various potential issues with python version/package version/graphics driver version incompatibilities that could throw this up that could have been resolved by a later update. Great to hear that you are unstuck. If anyone is still having trouble with this please let us know.