ccpnmr v3.1.1 crashes when loading spectrum

Analysis Version 3
1

I installed ccpnmr v3.1.1 on linux (red hat 8) on a server where my raw data and projects are located. The program is loading fine and the startup seems normal.
But when I try to display the spectrum or if I open a project the program crashes with the following message in the terminal:

INFO : application.loadSpectra(’/projects/sbinlab/people/mrp113/data/nmr/men/1Dwater_HSQC/MEN_20090331_del1-9G129RhPRL_gNhsqc.fid/test.ft2’)
INFO : mainWindow.newSpectrumDisplay(‘SP:test’, axisCodes=(‘N’, ‘H’), stripDirection=‘Y’, position=None, relativeTo=None)
Fatal Python error: Segmentation fault

Thread 0x00007fe7cd0e5700 (most recent call first):
File “/maps/projects/sbinlab/people/mrp113/ccpnmr3.1.1/miniconda/lib/python3.8/selectors.py”, line 468 in select
File “/maps/projects/sbinlab/people/mrp113/ccpnmr3.1.1/miniconda/lib/python3.8/asyncio/base_events.py”, line 1823 in _run_once
File “/maps/projects/sbinlab/people/mrp113/ccpnmr3.1.1/miniconda/lib/python3.8/asyncio/base_events.py”, line 570 in run_forever
File “/maps/projects/sbinlab/people/mrp113/ccpnmr3.1.1/miniconda/lib/python3.8/site-packages/tornado/platform/asyncio.py”, line 199 in start
File “/maps/projects/sbinlab/people/mrp113/ccpnmr3.1.1/miniconda/lib/python3.8/site-packages/ipykernel/iostream.py”, line 82 in _thread_main
File “/maps/projects/sbinlab/people/mrp113/ccpnmr3.1.1/miniconda/lib/python3.8/threading.py”, line 870 in run
File “/maps/projects/sbinlab/people/mrp113/ccpnmr3.1.1/miniconda/lib/python3.8/threading.py”, line 932 in _bootstrap_inner
File “/maps/projects/sbinlab/people/mrp113/ccpnmr3.1.1/miniconda/lib/python3.8/threading.py”, line 890 in _bootstrap

Thread 0x00007fe7ce8e8700 (most recent call first):
File “/maps/projects/sbinlab/people/mrp113/ccpnmr3.1.1/miniconda/lib/python3.8/threading.py”, line 302 in wait
File “/maps/projects/sbinlab/people/mrp113/ccpnmr3.1.1/miniconda/lib/python3.8/threading.py”, line 558 in wait
File “/maps/projects/sbinlab/people/mrp113/ccpnmr3.1.1/miniconda/lib/python3.8/site-packages/IPython/core/history.py”, line 854 in run
File “/maps/projects/sbinlab/people/mrp113/ccpnmr3.1.1/miniconda/lib/python3.8/site-packages/IPython/core/history.py”, line 60 in only_when_enabled
File “/maps/projects/sbinlab/people/mrp113/ccpnmr3.1.1/miniconda/lib/python3.8/site-packages/decorator.py”, line 232 in fun
File “/maps/projects/sbinlab/people/mrp113/ccpnmr3.1.1/miniconda/lib/python3.8/threading.py”, line 932 in _bootstrap_inner
File “/maps/projects/sbinlab/people/mrp113/ccpnmr3.1.1/miniconda/lib/python3.8/threading.py”, line 890 in _bootstrap

Current thread 0x00007fe83bdcf740 (most recent call first):
File “/maps/projects/sbinlab/people/mrp113/ccpnmr3.1.1/miniconda/lib/python3.8/site-packages/OpenGL/platform/baseplatform.py”, line 415 in call
File “/maps/projects/sbinlab/people/mrp113/ccpnmr3.1.1/src/python/ccpn/ui/gui/lib/OpenGL/CcpnOpenGLArrays.py”, line 277 in drawIndexVBO
File “/maps/projects/sbinlab/people/mrp113/ccpnmr3.1.1/src/python/ccpn/ui/gui/lib/OpenGL/CcpnOpenGL.py”, line 3394 in drawGrid
File “/maps/projects/sbinlab/people/mrp113/ccpnmr3.1.1/src/python/ccpn/ui/gui/lib/OpenGL/CcpnOpenGL.py”, line 3167 in _paintGL
File “/maps/projects/sbinlab/people/mrp113/ccpnmr3.1.1/src/python/ccpn/ui/gui/lib/OpenGL/CcpnOpenGL.py”, line 3067 in paintGL
File “/maps/projects/sbinlab/people/mrp113/ccpnmr3.1.1/src/python/ccpn/ui/gui/widgets/Application.py”, line 53 in start
File “/maps/projects/sbinlab/people/mrp113/ccpnmr3.1.1/src/python/ccpn/ui/gui/Gui.py”, line 204 in startUi
File “/maps/projects/sbinlab/people/mrp113/ccpnmr3.1.1/src/python/ccpn/framework/Framework.py”, line 424 in _startApplication
File “/maps/projects/sbinlab/people/mrp113/ccpnmr3.1.1/src/python/ccpn/AnalysisAssign/main.py”, line 46 in main
File “/maps/projects/sbinlab/people/mrp113/ccpnmr3.1.1/src/python/ccpn/AnalysisAssign/main.py”, line 54 in
File “/maps/projects/sbinlab/people/mrp113/ccpnmr3.1.1/miniconda/lib/python3.8/runpy.py”, line 86 in _run_code
File “/maps/projects/sbinlab/people/mrp113/ccpnmr3.1.1/miniconda/lib/python3.8/runpy.py”, line 193 in _run_module_as_main
/maps/projects/sbinlab/people/mrp113/ccpnmr3.1.1/bin/analysisassign: line 22: 3109370 Segmentation fault (core dumped) “${CCPNMR_TOP_DIR}${CCPN_PYTHON}” -W ignore “${ANALYSIS}” “$@”

I really hope your can help me with this.
Best Regards,
Morten

2

Oh dear - threading issues are always a bit of nightmare to deal with…
I’m assuming you installed the CentOS version? And that you have installed all the latest updates?

Vicky

3

Hello Vicky.
Yes I’ve installed the CentOS version and all the latest updates for V3.1.1.

4

Hello again Vicky,
is there anything I can do to solve this threading issue. I really hope you can help me with this.

post edit --------------------------------
I downloaded the new CentOS version 3.2 and that seemed to have fixed the issue:)